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6231940f42
- R needs to work with date-times (R-admin documents 'tzdata' as essential) - configure now includes a check that date-times work correctly - for -dev, 'tzdata' was already implicitly available via tcl-dev - some checks fail without a time-zone database
160 lines
3.7 KiB
Text
160 lines
3.7 KiB
Text
# Contributor: Nirosan <pnirosan@gmail.com>
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# Contributor: Jakub Jirutka <jakub@jirutka.cz>
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# Maintainer: Jakub Jirutka <jakub@jirutka.cz>
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pkgname=R
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pkgver=4.5.0
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pkgrel=0
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pkgdesc="Language and environment for statistical computing"
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url="https://www.r-project.org/"
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# riscv64: blocked by java-jre-headless
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# loongarch64: test failure
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arch="all !riscv64"
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license="( GPL-2.0-only OR GPL-3.0-only ) AND LGPL-2.1-or-later"
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depends="$pkgname-mathlib tzdata"
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depends_dev="
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bzip2-dev
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curl-dev>=7.28
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gcc
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gfortran
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icu-dev
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libdeflate-dev
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libjpeg-turbo
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libpng-dev
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make
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musl-dev
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openblas-dev>=0.3.0
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pcre2-dev
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readline-dev
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xz-dev
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zlib-dev
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"
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makedepends="
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$depends_dev
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cairo-dev
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java-jdk
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libxmu-dev
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pango-dev
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perl
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tiff-dev
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tk-dev
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"
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install="$pkgname.post-install"
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subpackages="$pkgname-static $pkgname-mathlib $pkgname-dev:_dev $pkgname-doc"
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source="https://cran.r-project.org/src/base/R-${pkgver%%.*}/R-$pkgver.tar.gz"
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_rhome="usr/lib/R"
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ldpath="/$_rhome/lib"
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build() {
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# Performance is more important than size for R. Moreover, -O2 has
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# only minimal impact on the R package size (less than 1 %).
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export CFLAGS="${CFLAGS/-Os/-O2}"
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export CPPFLAGS="${CPPFLAGS/-Os/-O2}"
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export CXXFLAGS="${CXXFLAGS/-Os/-O2}"
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# CXXFLAGS is propagated to /etc/R/Makeconf that is read when building
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# additional R modules. -D__MUSL__ is needed for some modules like Rcpp.
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# htps://github.com/RcppCore/Rcpp/issues/448
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export CXXFLAGS="$CXXFLAGS -D__MUSL__"
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./configure \
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--prefix=/usr \
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--sysconfdir=/etc/R \
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--localstatedir=/var \
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--mandir=/usr/share/man \
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--libdir=/usr/lib \
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rdocdir=/usr/share/doc/R \
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rincludedir=/usr/include/R \
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rsharedir=/usr/share/R \
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--disable-nls \
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--enable-R-shlib \
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--enable-java \
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--enable-lto \
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--without-recommended-packages \
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--with-blas=openblas \
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--with-cairo \
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--with-ICU \
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--with-jpeglib \
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--with-lapack \
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--with-libpng \
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--with-libtiff \
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--with-tcltk \
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--with-x
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make
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make -C src/nmath/standalone
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}
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check() {
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# Some tests fail if R cannot infer a time zone
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export TZ=UTC
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# Try running R (and also aid debugging).
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./bin/R --vanilla -s -e 'sessionInfo(); R_compiled_by(); str(.Machine)'
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case "$CARCH" in
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# A (non-portable) numerical regression test currently (R 4.4.0)
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# fails on the aarch64, loongarch64 and s390x runners.
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# Run at least two basic test suites:
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aarch64 | s390x | loongarch64)
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make -C tests test-Examples && make -C tests test-Specific || {
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tail -v -n 42 tests/*.fail; exit 1
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}
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;;
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*)
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make check || {
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tail -v -n 42 tests/*.fail; exit 1
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}
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;;
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esac
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# NOTE: EST5EDT-related differences reported for datetime.Rout are known
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# (see <https://mm.icann.org/pipermail/tz/2024-March/058740.html>
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# or also <https://bugs.r-project.org/show_bug.cgi?id=16843#c12>)
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}
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package() {
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local destdir="$pkgdir/$_rhome"
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make DESTDIR="$pkgdir" install
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# Install libRmath.so.
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cd src/nmath/standalone
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make DESTDIR="$pkgdir" install
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cd -
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# Fixup R wrapper script (taken from Arch).
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rm "$destdir"/bin/R
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ln -sf /usr/bin/R "$destdir"/bin/R
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# Remove some useless files (COPYING is duplicated, it will be
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# in -doc, don't worry).
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rm "$destdir"/COPYING "$destdir"/SVN-REVISION
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mkdir -p "$pkgdir"/etc/R
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# R apparently ignores --sysconfdir, so we must manually move configs
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# to /etc/R and make symlinks.
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cd "$destdir"/etc
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local f; for f in *; do
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mv "$f" "$pkgdir"/etc/R/ && ln -sf /etc/R/$f $f
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done
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cd -
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}
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mathlib() {
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pkgdesc="Standalone math library from the R project"
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depends=
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mkdir -p "$subpkgdir"/usr/lib
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mv "$pkgdir"/usr/lib/libRmath.so* "$subpkgdir"/usr/lib
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}
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_dev() {
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depends="R=$pkgver-r$pkgrel"
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default_dev
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}
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sha512sums="
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e32de0115f32c3e44f3a003deae6b35fa0ae1ed951f8a74d815e8a417de0e84547c2ec5386cf965208cc1c81e5d43a3706a15af929d295056201f2ffe6b9d84b R-4.5.0.tar.gz
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"
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