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76e614ae05
Signed-off-by: Quincy Fleming <quincyf467@protonmail.com> Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
42 lines
901 B
Bash
42 lines
901 B
Bash
# Copyright 1999-2025 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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PYTHON_COMPAT=( python3_{10..13} )
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inherit python-single-r1
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DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
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HOMEPAGE="http://www.htslib.org"
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SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2"
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LICENSE="MIT"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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REQUIRED_USE="${PYTHON_REQUIRED_USE}"
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RDEPEND="
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dev-lang/perl
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$(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]')
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=sci-libs/htslib-$(ver_cut 1-2)*:=
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sys-libs/zlib
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${PYTHON_DEPS}"
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DEPEND="${RDEPEND}"
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BDEPEND="${PYTHON_DEPS}"
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src_prepare() {
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default
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python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py
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# remove bundled htslib
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rm -r htslib-* || die
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}
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src_configure() {
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econf \
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--disable-bcftools-plugins \
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--disable-libgsl \
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--with-htslib=system
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}
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