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2d25fad95cBug: https://bugs.gentoo.org/473598 Bug: https://bugs.gentoo.org/720224 Signed-off-by: Fabian Groffen <grobian@gentoo.org>
74 lines
1.9 KiB
Bash
74 lines
1.9 KiB
Bash
# Copyright 1999-2024 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit autotools emboss-r3 readme.gentoo-r1
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DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package"
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SRC_URI="
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ftp://emboss.open-bio.org/pub/${PN^^}/${P^^}.tar.gz
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https://dev.gentoo.org/~soap/distfiles/${P}-patches-r1.tar.xz"
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S="${WORKDIR}/${P^^}"
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LICENSE+=" Apache-2.0 GPL-3+ CC-BY-3.0"
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KEYWORDS="~amd64 ~x86"
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IUSE="minimal"
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RDEPEND="
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!dev-build/cons
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!games-action/xbomber
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"
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PDEPEND="
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!minimal? (
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sci-biology/aaindex
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sci-biology/cutg
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sci-biology/primer3
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sci-biology/prints
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sci-biology/prosite
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sci-biology/rebase
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)"
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PATCHES=(
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"${WORKDIR}"/patches/${P}-fix-build-system.patch
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"${WORKDIR}"/patches/${P}-FORTIFY_SOURCE-fix.patch
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"${WORKDIR}"/patches/${P}-plplot-declarations.patch
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"${WORKDIR}"/patches/${P}-qa-implicit-declarations.patch
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"${WORKDIR}"/patches/${P}-C99-bool.patch
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"${WORKDIR}"/patches/${P}-Wimplicit-function-declaration.patch
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)
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src_prepare() {
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default
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eautoreconf
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}
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src_install() {
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emboss-r3_src_install
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readme.gentoo_create_doc
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# Install env file for setting libplplot and acd files path.
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newenvd - 22emboss <<- EOF
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# ACD files location
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EMBOSS_ACDROOT="${EPREFIX}/usr/share/EMBOSS/acd"
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EMBOSS_DATA="${EPREFIX}/usr/share/EMBOSS/data"
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EOF
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# Remove useless dummy files
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find "${ED}"/usr/share/EMBOSS -name dummyfile -delete \
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|| die "Failed to remove dummy files"
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# Move the provided codon files to a different directory. This will avoid
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# user confusion and file collisions on case-insensitive file systems (see
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# bug #115446). This change is documented in "README.gentoo".
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mv "${ED}"/usr/share/EMBOSS/data/CODONS{,.orig} \
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|| die "Failed to move CODON directory"
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# collision with dev-texlive/texlive-latexextra, bug #927976
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mv "${ED}"/usr/bin/{,emboss-}wordcount || die
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}
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pkg_postinst() {
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readme.gentoo_print_elog
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}
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