mirror of
https://anongit.gentoo.org/git/repo/gentoo.git
synced 2025-06-09 14:44:11 +02:00
54 lines
1.3 KiB
Bash
54 lines
1.3 KiB
Bash
# Copyright 1999-2024 Gentoo Authors
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
|
|
EAPI=8
|
|
|
|
inherit flag-o-matic toolchain-funcs
|
|
|
|
DESCRIPTION="A suite of algorithms for ecological bioinformatics"
|
|
HOMEPAGE="https://mothur.org/"
|
|
SRC_URI="https://github.com/mothur/mothur/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
|
|
|
|
LICENSE="GPL-3"
|
|
SLOT="0"
|
|
KEYWORDS="amd64 ~x86"
|
|
IUSE="boost gsl hdf5 mpi +readline"
|
|
|
|
RDEPEND="
|
|
sci-biology/uchime
|
|
boost? ( dev-libs/boost:=[zlib] )
|
|
gsl? ( sci-libs/gsl:= )
|
|
hdf5? ( sci-libs/hdf5:=[cxx] )
|
|
mpi? ( virtual/mpi )
|
|
"
|
|
DEPEND="${RDEPEND}"
|
|
|
|
PATCHES=(
|
|
"${FILESDIR}"/${PN}-1.48.0-build.patch
|
|
)
|
|
|
|
src_configure() {
|
|
use mpi && export CXX=mpicxx || tc-export CXX
|
|
use amd64 && append-cppflags -DBIT_VERSION
|
|
}
|
|
|
|
src_compile() {
|
|
# bug #862273
|
|
append-flags -fno-strict-aliasing
|
|
filter-lto
|
|
|
|
# USEBOOST - link with boost libraries. Must install boost. Allows the make.contigs command to read .gz files.
|
|
# USEHDF5 - link with HDF5cpp libraries. Must install HDF5. Allows the biom.info command to read Biom format 2.0.
|
|
# USEGSL - link with GNU Scientific libraries. Must install GSL. Allows the estimiator.single command to find diversity estimates.
|
|
emake \
|
|
USEBOOST=$(usex boost) \
|
|
USEHDF5=$(usex hdf5) \
|
|
USEGSL=$(usex gsl) \
|
|
USEMPI=$(usex mpi) \
|
|
USEREADLINE=$(usex readline) \
|
|
OPTIMIZE=no
|
|
}
|
|
|
|
src_install() {
|
|
dobin mothur
|
|
}
|