mirror of
https://anongit.gentoo.org/git/repo/gentoo.git
synced 2025-06-12 08:08:56 +02:00
60 lines
2.5 KiB
Diff
60 lines
2.5 KiB
Diff
https://github.com/abacus-gene/paml/pull/46
|
|
--- a/src/Makefile
|
|
+++ b/src/Makefile
|
|
@@ -9,39 +9,39 @@ LIBS = -lm # -lM
|
|
all : $(PRGS)
|
|
|
|
baseml : baseml.o tools.o treesub.c treespace.c paml.h
|
|
- $(CC) $(CFLAGS) -o $@ baseml.o tools.o $(LIBS)
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ baseml.o tools.o $(LIBS)
|
|
basemlg : basemlg.o tools.o treesub.c treespace.c paml.h
|
|
- $(CC) $(CFLAGS) -o $@ basemlg.o tools.o $(LIBS)
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ basemlg.o tools.o $(LIBS)
|
|
codeml : codeml.o tools.o treesub.c treespace.c paml.h
|
|
- $(CC) $(CFLAGS) -o $@ codeml.o tools.o $(LIBS)
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ codeml.o tools.o $(LIBS)
|
|
evolver : evolver.o tools.o treesub.c treespace.c paml.h
|
|
- $(CC) $(CFLAGS) -o $@ evolver.o tools.o $(LIBS)
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ evolver.o tools.o $(LIBS)
|
|
pamp : pamp.o tools.o treesub.c treespace.c paml.h
|
|
- $(CC) $(CFLAGS) -o $@ pamp.o tools.o $(LIBS)
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ pamp.o tools.o $(LIBS)
|
|
mcmctree : mcmctree.o tools.o treesub.c treespace.c paml.h
|
|
- $(CC) $(CFLAGS) -o $@ mcmctree.c tools.o $(LIBS)
|
|
- $(CC) $(CFLAGS) -o infinitesites -D INFINITESITES mcmctree.c tools.o $(LIBS)
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ mcmctree.c tools.o $(LIBS)
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o infinitesites -D INFINITESITES mcmctree.c tools.o $(LIBS)
|
|
yn00: yn00.o tools.o paml.h
|
|
- $(CC) $(CFLAGS) -o $@ yn00.o tools.o $(LIBS)
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ yn00.o tools.o $(LIBS)
|
|
chi2 : chi2.o
|
|
- $(CC) $(CFLAGS) -o $@ chi2.c $(LIBS)
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ chi2.c $(LIBS)
|
|
|
|
tools.o : paml.h tools.c
|
|
- $(CC) $(CFLAGS) -c tools.c
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c tools.c
|
|
baseml.o : paml.h baseml.c treesub.c treespace.c
|
|
- $(CC) $(CFLAGS) -c baseml.c
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c baseml.c
|
|
basemlg.o : paml.h basemlg.c treesub.c
|
|
- $(CC) $(CFLAGS) -c basemlg.c
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c basemlg.c
|
|
codeml.o : paml.h codeml.c treesub.c treespace.c
|
|
- $(CC) $(CFLAGS) -c codeml.c
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c codeml.c
|
|
evolver.o: evolver.c treesub.c treespace.c
|
|
- $(CC) $(CFLAGS) -c evolver.c
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c evolver.c
|
|
mcmctree.o : paml.h mcmctree.c treesub.c treespace.c
|
|
- $(CC) $(CFLAGS) -c mcmctree.c
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c mcmctree.c
|
|
pamp.o : paml.h pamp.c treesub.c treespace.c
|
|
- $(CC) $(CFLAGS) -c pamp.c
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c pamp.c
|
|
yn00.o : paml.h yn00.c
|
|
- $(CC) $(CFLAGS) -c yn00.c
|
|
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c yn00.c
|
|
|
|
clean :
|
|
-rm *.o $(PRGS)
|