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37 lines
860 B
Bash
37 lines
860 B
Bash
# Copyright 1999-2024 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit toolchain-funcs
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DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood"
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HOMEPAGE="https://abacus.gene.ucl.ac.uk/software/paml.html"
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SRC_URI="https://github.com/abacus-gene/${PN}/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
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LICENSE="free-noncomm"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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PATCHES=(
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"${FILESDIR}"/${PN}-4.10.7-LDFLAGS.patch
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)
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src_compile() {
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emake -C src CC="$(tc-getCC)" CFLAGS="${CFLAGS}" LDFLAGS="${LDFLAGS}"
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}
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src_install() {
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dobin src/{baseml,basemlg,codeml,evolver,pamp,mcmctree,infinitesites,yn00,chi2}
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dodoc -r README.md doc/.
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insinto /usr/share/${PN}/control
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doins examples/*.ctl
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insinto /usr/share/${PN}/dat
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doins -r examples/stewart* examples/*.dat dat/.
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insinto /usr/share/${PN}
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doins -r examples
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}
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