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47 lines
925 B
Bash
47 lines
925 B
Bash
# Copyright 1999-2025 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit toolchain-funcs
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DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
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HOMEPAGE="http://www.htslib.org/"
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SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2"
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LICENSE="MIT"
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SLOT="0"
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KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
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RDEPEND="
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dev-lang/perl
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=sci-libs/htslib-$(ver_cut 1-2)*:=
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sys-libs/ncurses:=[unicode(+)]
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sys-libs/zlib"
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DEPEND="${RDEPEND}"
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BDEPEND="virtual/pkgconfig"
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src_prepare() {
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default
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# remove bundled htslib
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rm -r htslib-* || die
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}
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src_configure() {
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econf \
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--with-ncurses \
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--with-htslib=system \
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CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)"
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}
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src_compile() {
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emake AR="$(tc-getAR)"
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}
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src_install() {
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default
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dodoc -r examples
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docompress -x /usr/share/doc/${PF}/examples
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}
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