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86e4c6c3cf
Closes: https://bugs.gentoo.org/862327 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
55 lines
1.2 KiB
Bash
55 lines
1.2 KiB
Bash
# Copyright 1999-2024 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit flag-o-matic toolchain-funcs
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MY_HASH="4466924"
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MY_PV="${PV}.${MY_HASH}"
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MY_P="${PN^^}_distribution_Version_${MY_PV}"
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DESCRIPTION="A multiple sequence alignment package"
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HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
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SRC_URI="http://www.tcoffee.org/Packages/Beta/Latest/${MY_P}.tar.gz"
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S="${WORKDIR}/${MY_P}"
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LICENSE="GPL-2"
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SLOT="0"
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KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
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RDEPEND="
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sci-biology/clustalw
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sci-chemistry/tm-align"
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PATCHES=(
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"${FILESDIR}"/${P}-mayhem.patch
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"${FILESDIR}"/${P}-set_proper_dir_permissions.patch
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"${FILESDIR}"/${P}-cxx11.patch
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"${FILESDIR}"/${P}-gcc7.patch
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"${FILESDIR}"/${P}-makefile.patch
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)
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src_configure() {
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# -Werror=strict-aliasing
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# https://bugs.gentoo.org/862327
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# https://github.com/cbcrg/tcoffee/issues/60
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#
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# Do not trust with LTO either
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append-flags -fno-strict-aliasing
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filter-lto
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tc-export CXX
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append-cxxflags -Wno-write-strings -Wno-unused-result
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}
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src_compile() {
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emake -C t_coffee_source t_coffee
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}
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src_install() {
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dobin t_coffee_source/t_coffee
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insinto /usr/share/t-coffee
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doins -r example
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}
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