mirror of
https://anongit.gentoo.org/git/repo/gentoo.git
synced 2025-12-21 10:50:54 +00:00
203d57887fNew snapshot to include in particular more json features.
deps :
libxml2/cairo are not required with minimal
rm openbabel-perl
replace sed :
perl LIB_INSTALL_DIR (no-op) -> set PERL_INSTDIR
PYTHON_BINDINGS (no-op for test/CMakeLists.txt due to a typo) -> not required
examples RUNTIME_DESTINATION -> patch with CMAKE_INSTALL_DOCDIR
find_package :
use DISABLE_FIND_PACKAGE for Cairo(png), wxWidgets(wxwidgets) and Boost
use ADD_INCHI_FORMAT to prevent using bundled inchi
openbabel-python-cmake :
use target_include_directories instead of include_directories to prevent
including all python_targets at the same time for each implementation.
tests :
skip two more tests with known issues
rm -O2 exclusions introduced with 1fce6e91e6
It seems fixed now (checked with -O2/clang/lto/gcc15/+-openmp/+-cpu_flags).
This will require investigation if it reappears.
add py3.13 (tests passed)
Signed-off-by: Nicolas PARLANT <nicolas.parlant@parhuet.fr>
Signed-off-by: Sam James <sam@gentoo.org>
103 lines
4.4 KiB
CMake
103 lines
4.4 KiB
CMake
# The following is a cmake fragment taken from scripts/CMakeLists.txt and
|
|
# edited for Gentoo python multibuild compatibility.
|
|
|
|
if (DO_PYTHON_BINDINGS)
|
|
# Tags should be edited to reflect the active python implementation
|
|
set(EPYTHON @@EPYTHON@@)
|
|
set(PYTHON_INCLUDE_DIR @@PYTHON_INCLUDE_DIR@@)
|
|
set(PYTHON_LIBS @@PYTHON_LIBS@@)
|
|
set(PYTHON_SITEDIR @@PYTHON_SITEDIR@@)
|
|
|
|
add_custom_command(
|
|
OUTPUT ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel-python.cpp ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel.py
|
|
COMMAND ${SWIG_EXECUTABLE} -python -c++ -small -O -templatereduce -naturalvar -I${PYTHON_INCLUDE_DIR} -I${CMAKE_SOURCE_DIR}/include -I${CMAKE_BINARY_DIR}/include -o ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel-python.cpp ${eigen_define} -outdir ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON} ${CMAKE_SOURCE_DIR}/scripts/openbabel-python.i
|
|
MAIN_DEPENDENCY openbabel-python.i
|
|
VERBATIM
|
|
)
|
|
|
|
configure_file(${CMAKE_SOURCE_DIR}/scripts/python/openbabel/__init__.py.in
|
|
${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel/__init__.py)
|
|
|
|
add_library(bindings_python_${EPYTHON} MODULE ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel-python.cpp)
|
|
target_include_directories(bindings_python_${EPYTHON} PRIVATE ${PYTHON_INCLUDE_DIR})
|
|
target_link_libraries(bindings_python_${EPYTHON} ${PYTHON_LIBS} ${BABEL_LIBRARY})
|
|
|
|
set_target_properties(bindings_python_${EPYTHON}
|
|
PROPERTIES
|
|
OUTPUT_NAME _openbabel
|
|
LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel
|
|
PREFIX ""
|
|
SUFFIX .so )
|
|
|
|
add_dependencies(bindings_python_${EPYTHON} openbabel)
|
|
|
|
install(TARGETS bindings_python_${EPYTHON}
|
|
LIBRARY DESTINATION ${PYTHON_SITEDIR}/openbabel
|
|
COMPONENT bindings_python)
|
|
install(FILES ${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel/__init__.py
|
|
DESTINATION ${PYTHON_SITEDIR}/openbabel
|
|
COMPONENT bindings_python)
|
|
install(FILES ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel.py
|
|
DESTINATION ${PYTHON_SITEDIR}/openbabel
|
|
COMPONENT bindings_python)
|
|
install(FILES ${CMAKE_SOURCE_DIR}/scripts/python/openbabel/pybel.py
|
|
DESTINATION ${PYTHON_SITEDIR}/openbabel
|
|
COMPONENT bindings_python)
|
|
|
|
if (ENABLE_TESTS)
|
|
# Make sure all module files are together in the same directory for testing
|
|
add_custom_command(TARGET bindings_python_${EPYTHON} POST_BUILD
|
|
COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel.py ${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel/
|
|
COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_SOURCE_DIR}/scripts/python/openbabel/pybel.py ${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel/)
|
|
set(TEST_SOURCE_DIR ${CMAKE_SOURCE_DIR}/test)
|
|
# define TESTDATADIR for tests that need input files
|
|
add_definitions(-DTESTDATADIR="${TEST_SOURCE_DIR}/files/")
|
|
# define FORMATDIR for location of format plugin binaries
|
|
set(FORMATDIR "${CMAKE_BINARY_DIR}/lib${LIB_SUFFIX}/")
|
|
add_definitions(-DFORMATDIR="${FORMATDIR}/")
|
|
include_directories(${TEST_SOURCE_DIR})
|
|
|
|
# The macro is modified from cmake/modules/UsePythonTest.cmake
|
|
MACRO(ADD_PYTHON_TEST TESTNAME FILENAME)
|
|
GET_SOURCE_FILE_PROPERTY(loc ${FILENAME} LOCATION)
|
|
STRING(REGEX REPLACE ";" " " wo_semicolumn "${ARGN}")
|
|
FILE(WRITE ${CMAKE_BINARY_DIR}/test/${TESTNAME}.cmake
|
|
"
|
|
MESSAGE(\"${PYTHONPATH}\")
|
|
EXECUTE_PROCESS(
|
|
COMMAND ${EPYTHON} ${loc} ${wo_semicolumn}
|
|
RESULT_VARIABLE import_res
|
|
OUTPUT_VARIABLE import_output
|
|
ERROR_VARIABLE import_output
|
|
)
|
|
|
|
# Pass the output back to ctest
|
|
IF(import_output)
|
|
MESSAGE(\${import_output})
|
|
ENDIF(import_output)
|
|
IF(import_res)
|
|
MESSAGE(SEND_ERROR \${import_res})
|
|
ENDIF(import_res)
|
|
"
|
|
)
|
|
ADD_TEST(${TESTNAME} ${CMAKE_COMMAND} -P ${CMAKE_BINARY_DIR}/test/${TESTNAME}.cmake)
|
|
ENDMACRO(ADD_PYTHON_TEST)
|
|
|
|
set(pybindtests
|
|
bindings
|
|
_pybel
|
|
example
|
|
obconv_writers
|
|
cdjsonformat
|
|
pcjsonformat
|
|
roundtrip
|
|
)
|
|
foreach(pybindtest ${pybindtests})
|
|
ADD_PYTHON_TEST(pybindtest_${pybindtest}_${EPYTHON} ${TEST_SOURCE_DIR}/test${pybindtest}.py)
|
|
set_tests_properties(pybindtest_${pybindtest}_${EPYTHON} PROPERTIES
|
|
ENVIRONMENT "PYTHONPATH=${CMAKE_BINARY_DIR}/scripts/${EPYTHON}:${CMAKE_BINARY_DIR}/lib${LIB_SUFFIX};LD_LIBRARY_PATH=${CMAKE_BINARY_DIR}/scripts/${EPYTHON}:${CMAKE_BINARY_DIR}/lib${LIB_SUFFIX}:\$ENV{LD_LIBRARY_PATH};BABEL_LIBDIR=${CMAKE_BINARY_DIR}/lib${LIB_SUFFIX}/;BABEL_DATADIR=${CMAKE_SOURCE_DIR}/data"
|
|
FAIL_REGULAR_EXPRESSION "ERROR;FAIL;Test failed"
|
|
)
|
|
endforeach(pybindtest ${pybindtests})
|
|
endif (ENABLE_TESTS)
|
|
endif(DO_PYTHON_BINDINGS)
|